BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007C05LP1|AL425661
(711 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1461 1043 0.0
>3x_Contig1461
Length = 5478
Score = 1043 bits (523), Expect = 0.0
Identities = 661/709 (93%), Gaps = 3/709 (0%)
Strand = Plus / Plus
Query: 4 aaccagataactatcttatgaagcagtatccacaagtcttaacaacaaatgctgttaagt 63
||||| |||| |||||||||||||||||||||||| ||||||||||||||||| | || |
Sbjct: 2028 aaccaaataaatatcttatgaagcagtatccacaattcttaacaacaaatgctctcaact 2087
Query: 64 cccgcatcaactgttgcagatattttatcatgattagaaatgcaagttaggaaacaagtt 123
|||||||||||| | ||| |||||||||||| |||| |||||||||| ||||||||| ||
Sbjct: 2088 cccgcatcaactttcgcatatattttatcattattataaatgcaagtaaggaaacaattt 2147
Query: 124 tccatactcgcgttggaagcaacaattcaacagtttttacactatcaaatcatcacaacc 183
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2148 tccatactcgcttcaaaagcaacaattcaacagtttttacactatcaaatcatcacaacc 2207
Query: 184 cctccatgccatagcactctttgagtttcctctaaccgacttccactgaacactgctccg 243
||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 2208 cctccattccatagcactctttaattttcctctaaccaacttccactgaacactgctcca 2267
Query: 244 atgtttcgcagaaacagaa-cgttcaatatcatc-ggccaaagagga-ggttacactcac 300
|| ||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct: 2268 atttttcgcaaaaacagaaacgttcaatatcatccggccaaagaggaaggttacactcac 2327
Query: 301 agaatcacagacaaccaaagtcgcccggctattctgtwaggcatttyyycaaatatggtt 360
| ||||||| |||||||||||||||| |||||||||| ||||||| |||||||||||
Sbjct: 2328 aaaatcacaaacaaccaaagtcgccccgctattctgtaaggcattcccccaaatatggtt 2387
Query: 361 tctttggtttggattgcyattggctagtaatccaccaaatcctccactgctcgccaatgg 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 tctttggtttggattgccattggctagtaatccaccaaatcctccactgctcgccaatgg 2447
Query: 421 aattgctagatgtncatgacgagactgttcaggcgtnttgcagcatctttcgatgctgcn 480
||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2448 aatcgctagatgtccatgacgagactgttcaggcgtcttgcagcatctttcgatgctgca 2507
Query: 481 cacacccatgttaccgcgctgtatagggccccaggcttgatctgacgatyacctagaaac 540
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2508 cacacccatgtcaccgcgctgtatagggccccaggcttgatctgacgatcacctagaaac 2567
Query: 541 tctctccaccgcgagangaggccatagtctgttcgacgaacgactacattcaaattttac 600
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 2568 tctctccaccgcgagacgaggccatagtctgttcgacgaacgactacatccaaatcttac 2627
Query: 601 tcaagtttgtttncaaactctttccgattcgtcttcaactgctttcgcatgaagtacctt 660
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2628 tcaagtttgtttccaaactctttccgattcgtcttcaactgctttcgcatgaagtacctc 2687
Query: 661 ccggcctatttttctcanccgtggtcttctttctattagccctcacgtt 709
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2688 ccggcctatttttctcacccgtggtcttctttctattagccctcacgtt 2736
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3840
Number of Sequences: 1807
Number of extensions: 3840
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 711
length of database: 10,358,551
effective HSP length: 16
effective length of query: 695
effective length of database: 10,329,639
effective search space: 7179099105
effective search space used: 7179099105
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)